TIDE

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Available under the GNU Public License Version 3. It has been tested on Linux and Mac OS X.

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You can download our analysis results on TCGA, PRECOG and METABRIC cohorts.

Download
Available under the GNU Public License Version 3.

The table summarizes the datasets included in the platform. For data that does NOT have access control, users can directly download our processed one. There are two files on each compressed folder, which are *.self_subtract and *.clinical. The '.self_subtract' file is normalized gene expression, and the '.clinical' contains patients' clinical outcomes.

Study	Data Public Available			Access-controlled	Download
	Transcriptome	Clinical Outcome	Response Outcome
Uppaluri et al.,Cli Cancer Res 2020	NCT02296684	Paper Supplementary Table	Paper Supplementary Table		Resctricted
Braun et al., Nat Medicine 2020	Paper Supplementary Table	Paper Supplementary Table	Paper Supplementary Table		Wait for the next release.
Zhao et al., Nat Medicine 2019	PRJNA482620	Paper Supplementary Table	Paper Supplementary Table		Wait for the next release.
Liu et al., Nat Medicine 2019	phs000452.v3.p1	Paper Supplementary Table	Paper Supplementary Table	dbGaP	Restricted
Gide et al., Cancer Cell 2019	PRJEB23709	Paper Supplementary Table (1) Paper Supplementary Table (2)	Paper Supplementary Table (1) Paper Supplementary Table (2)		Download 1 Download 2
Cristescu et al., Science 2018	Only expression of a few genes (n=29) available	Require to submit an access application	Require to submit an access application
Rodig et al.,  Sci Transl Med 2018	Only released processed data related to the study.	Only released processed data related to the study.	Only released processed data related to the study.
McDermott et al., Nat Medicine 2018	EGAD00001004183	No information.	EGAD00001004183	EGA	Restricted
Kim et al., Nat Medicine 2018	PRJEB25780	No information.	Paper Supplementary File		Download
Mariathasan et al., Nature 2018	EGAS00001002556	EGAS00001002556	EGAS00001002556	EGA	Restricted
Miao et al., Science 2018	phs001493.v1.p1	Paper Supplementary Table (1) Paper Supplementary Table (2)	Paper Supplementary Table (1) Paper Supplementary Table (2)	dbGaP	Restricted
Riaz et al., Cell 2017	GSE91061	Paper Supplementary Table	Paper Supplementary Table		Download 1 Download 2
Nathanson et al., Cancer Immunol Res 2017	Paper Supplementary Table	Paper Supplementary Table	Paper Supplementary Table		Download 1 Download 2
Prat et al., Cancer Res 2017	GSE93157	Paper Supplementary Table	Paper Supplementary Table		Download
Ayers et al., J Clin Invest 2017	Do Not Provide	Do Not Provide	Do Not Provide
Lauss et al., Nat Commun 2017	GSE100797	Paper Supplementary Table	Paper Supplementary Table		Download
Hugo et al., Cell 2016	GSE78220	Paper Supplementary Table	Paper Supplementary Table		Download
Chen et al., Cancer Discov 2016	Paper Supplementary Table	No information.	Paper Supplementary Table		Download Download
Van Allen et al., Science 2015	phs000452.v2.p1	Paper Supplementary Table	Paper Supplementary Table	dbGaP	Restricted